Books
Lafaye de Micheaux, Pierre, Drouilhet, Rémy and Liquet, Benoit (2013). The R Software: fundamentals of programming and statistical analysis. New York, NY, United States: Springer. doi: 10.1007/978-1-4614-9020-3
Lafaye de Micheaux, Pierre, Drouilhet, Remy and Liquet, Benoit (2010). Le logiciel R, Maitriser le langage, Effectuer des analyses statistiques. Paris, France: Springer.
Book Chapters
Saracco, J., Gannoun, A., Guinot, C. and Liquet, B. (2007). A semiparametric approach to estimate reference curves for biophysical properties of the skin.. Statistical Methods for Biostatistics and Related Fields.. (pp. 181-205) edited by Wolfgang Härdle, Yuichi Mori and Philippe Vieu. Berlin: Springer.
Gannoun, Ali, Liquet, Beno, Saracco, Jerome and Urfer, Wolfgang (2007). A kernel method used for the analysis of replicated micro-array experiments. Statistical methods for biostatistics and related fields. (pp. 45-61) Berlin, Germany: Springer. doi: 10.1007/978-3-540-32691-5_3
Liquet, Benoit and Commenges, Daniel (2005). Selecting a semi-parametric estimator by the expected log-likelihood. Probability, statistics and modelling in public health. (pp. 332-349) New York, NY, United States: Springer US. doi: 10.1007/0-387-26023-4_22
Journal Articles
Sutton, Matthew, Sugier, Pierre-Emmanuel, Truong, Therese and Liquet, Benoit (2022). Leveraging pleiotropic association using sparse group variable selection in genomics data. BMC Medical Research Methodology, 22 (1) 9. doi: 10.1186/s12874-021-01491-8
Li Bassi, Gianluigi, Suen, Jacky Y, Dalton, Heidi J, White, Nicole, Shrapnel, Sally, Fanning, Jonathon P, Liquet, Benoit, Hinton, Samuel, Vuorinen, Aapeli, Booth, Gareth, Millar, Jonathan E, Forsyth, Simon, Panigada, Mauro, Laffey, John, Brodie, Daniel, Fan, Eddy, Torres, Antoni, Chiumello, Davide, Corley, Amanda, Elhazmi, Alyaa, Hodgson, Carol, Ichiba, Shingo, Luna, Carlos, Murthy, Srinivas, Nichol, Alistair, Ng, Pauline Yeung, Ogino, Mark, Pesenti, Antonio, Trieu, Huynh Trung ... Obonyo, Gikenyi N. (2021). An appraisal of respiratory system compliance in mechanically ventilated covid-19 patients. Critical Care, 25 (1) 199, 1-22. doi: 10.1186/s13054-021-03518-4
Bassi, Gianluigi Li, Suen, Jacky, Barnett, Adrian Gerard, Corley, Amanda, Millar, Jonathan, Fanning, Jonathon, Lye, India, Colombo, Sebastiano, Wildi, Karin, Livingstone, Samantha, Abbate, Gabriella, Hinton, Samuel, Liquet, Benoit, Shrapnel, Sally, Dalton, Heidi and Fraser, John F. (2020). Design and rationale of the COVID-19 Critical Care Consortium international, multicentre, observational study. BMJ Open, 10 (12) e041417, 1-6. doi: 10.1136/bmjopen-2020-041417
Benham, Tim, Duan, Qibin, Kroese, Dirk P. and Liquet, Benoît (2017). CEoptim: cross-entropy R package for optimization. Journal of Statistical Software, 76 (1), 1-29. doi: 10.18637/jss.v076.i08
Chong, Hsu P., Cordeaux, Yolande, Ranjan, Yorain Sri, Richardson, Sylvia, Liquet, Benoit, Smith, Gordon C. S. and Charnock-Jones, David Stephen (2016). Age-related changes in murine myometrial transcript profile are mediated by exposure to the female sex hormones. Aging Cell, 15 (1), 177-180. doi: 10.1111/acel.12406
Liquet, Benoit, de Micheaux, Pierre Lafaye, Hejblum, Boris P. and Thiebaut, Rodolphe (2016). Group and sparse group partial least square approaches applied in genomics context. Bioinformatics, 32 (1), 35-42. doi: 10.1093/bioinformatics/btv535
Liquet, Benoit and Nazarathy, Yoni (2015). A dynamic view to moment matching of truncated distributions. Statistics and Probability Letters, 104, 87-93. doi: 10.1016/j.spl.2015.05.006
Commenges, Daniel, Proust-Lima, Cecile, Samieri, Cecilia and Liquet, Benoit (2015). A universal approximate cross-validation criterion for regular risk functions. International Journal of Biostatistics, 11 (1), 51-67. doi: 10.1515/ijb-2015-0004
Chavent, Marie, Girard, Stéphane, Kuentz-Simonet, Vanessa, Liquet, Benoit, Nguyen, Thi Mong Ngoc and Saracco, Jérôme (2014). A sliced inverse regression approach for data stream. Computational Statistics, 29 (5), 1129-1152. doi: 10.1007/s00180-014-0483-4
Truong, Therese, Liquet, Benoit, Menegaux, Florence, Plancoulaine, Sabine, Laurent-Puig, Pierre, Mulot, Claire, Cordina-Duverger, Emilie, Sanchez, Marie, Arveux, Patrick, Kerbrat, Pierre, Richardson, Sylvia and Guenel, Pascal (2014). Breast cancer risk, nightwork, and circadian clock gene polymorphisms. Endocrine-Related Cancer, 21 (4), 629-638. doi: 10.1530/ERC-14-0121
Coudret, Raphaël, Liquet, Benoit and Saracco, Jérôme (2014). Comparison of sliced inverse regression approaches for underdetermined cases. Journal de la Société Française de Statistique, 155 (2), 72-96.
Lafaye de Micheaux, Pierre, Liquet, Benoit, Marques, Sébastien and Riou, Jérémie (2014). Power and sample size determination in clinical trials with multiple primary continuous correlated end points. Journal of Biopharmaceutical Statistics, 24 (2), 378-397. doi: 10.1080/10543406.2013.860156
Chadeau-Hyam, Marc, Campanella, Gianluca, Jombart, Thibaut, Bottolo, Leonardo, Portengen, Lutzen, Vineis, Paolo, Liquet, Benoit and Vermeulen, Roel C. H. (2013). Deciphering the complex: Methodological overview of statistical models to derive OMICS-based biomarkers. Environmental And Molecular Mutagenesis, 54 (7), 542-557. doi: 10.1002/em.21797
Bottolo, Leonardo, Chadeau-Hyam, Marc, Hastie, David I., Zeller, Tanja, Liquet, Benoit, Newcombe, Paul, Yengo, Loic, Wild, Philipp S., Schillert, Arne, Ziegler, Andreas, Nielsen, Sune F., Butterworth, Adam S., Ho, Weang Kee, Castagne, Raphaele, Munzel, Thomas, Tregouet, David, Falchi, Mario, Cambien, Francois, Nordestgaard, Borge G., Fumeron, Frederic, Tybjaerg-Hansen, Anne, Froguel, Philippe, Danesh, John, Petretto, Enrico, Blankenberg, Stefan, Tiret, Laurence and Richardson, Sylvia (2013). GUESS-ing Polygenic Associations with Multiple Phenotypes Using a GPU-Based Evolutionary Stochastic Search Algorithm. PLoS Genetics, 9 (8) e1003657, e1003657. doi: 10.1371/journal.pgen.1003657
Liquet, Benoit and Riou, Jérémie (2013). Correction of the significance level after multiple coding of an explanatory variable in generalized linear model. BMC Medical Research Methodology, 13 (1) 75, 75.1-75.10. doi: 10.1186/1471-2288-13-75
Liquet, Benoit, Le Cao, Kim-Anh, Hocini, Hakim and Thiebaut, Rodolphe (2012). A novel approach for biomarker selection and the integration of repeated measures experiments from two assays. BMC Bioinformatics, 13 (1) 325, 325.1-325.14. doi: 10.1186/1471-2105-13-325
Coeurjolly, Jean-Francois, Nguile-Makao, Moliere, Timsit, Jean-Francois and Liquet, Benoit (2012). Attributable risk estimation for adjusted disability multistate models: application to nosocomial infections. Biometrical Journal, 54 (5), 600-616. doi: 10.1002/bimj.201100222
Chavent, Marie, Kuentz-Simonet, Vanessa, Liquet, Benot and Saracco, Jerome (2012). ClustOfVar: An R Package for the Clustering of Variables. Journal of Statistical Software, 50 (13), 1-16.
Liquet, Benoit, Timsit, Jean-Francois and Rondeau, Virginie (2012). Investigating hospital heterogeneity with a multi-state frailty model: application to nosocomial pneumonia disease in intensive care units. Bmc Medical Research Methodology, 12 (1) 79. doi: 10.1186/1471-2288-12-79
Commenges, Daniel, Liquet, Benoit and Proust-Lima, Cecile (2012). Choice of prognostic estimators in joint models by estimating differences of expected conditional Kullback-Leibler risks. Biometrics, 68 (2), 380-387. doi: 10.1111/j.1541-0420.2012.01753.x
Josse, Julie, Chavent, Marie, Liquet, Benot and Husson, Francois (2012). Handling missing values with regularized iterative multiple correspondence analysis. Journal of Classification, 29 (1), 91-116. doi: 10.1007/s00357-012-9097-0
Liquet, Benoit and Saracco, Jerome (2012). A graphical tool for selecting the number of slices and the dimension of the model in SIR and SAVE approaches. Computational Statistics, 27 (1), 103-125. doi: 10.1007/s00180-011-0241-9
Liquet, Benoit and Commenges, Daniel (2011). Choice of estimators based on different observations: modified AIC and LCV criteria. Scandinavian Journal of Statistics, 38 (2), 268-287. doi: 10.1111/j.1467-9469.2010.00699.x
Chavent, Marie, Kuentz, Vanessa, Liquet, Benoit and Saracco, Jerome (2011). A sliced inverse regression approach for a stratified population. Communications in Statistics-Theory and Methods, 40 (21), 3857-3878. doi: 10.1080/03610926.2010.501940
Chavent, Marie, Liquet, Benoit and Saracco, Jerome (2010). A semiparametric approach for a multivariate sample selection model. Statistica Sinica, 20 (2), 513-536.
Liquet, Benoit (2010). Choix d'estimateurs base sur le risque de Kullback-Leibler.. Journal de la Société Française de Statistique, 151 (1), 38-57.
Kuentz, Vanessa, Liquet, Benoît and Saracco, Jérôme (2010). Bagging version of sliced inverse regression. Communications in Statistics - Theory and Methods, 39, 1985-1996. doi: 10.1080/03610920902948251
Lafaye de Micheaux, Pierre and Liquet, Benoit (2009). Convergence concepts: an R package to investigate various modes of convergence. The R Journal, 1 (2), 18-25.
de Micheaux, Pierre Lafaye and Liquet, Benoit (2009). Understanding convergence concepts: a visual-minded and graphical simulation-based approach. American Statistician, 63 (2), 173-178. doi: 10.1198/tas.2009.0032
Commenges, Daniel and Liquet, Benoit (2008). Asymptotic distribution of score statistics for spatial cluster detection with censored data. Biometrics, 64 (4), 1287-1292. doi: 10.1111/j.1541-0420.2008.01132.x
Rondeau, V., Michiels, S., Liquet, B. and Pignon, J. P. (2008). Investigating trial and treatment heterogeneity in an individual patient data meta-analysis of survival data by means of the penalized maximum likelihood approach. Statistics in Medicine, 27 (11), 1894-1910. doi: 10.1002/sim.3161
Cenier, Tristan, Amat, Corine, Litaudon, Philippe, Garcia, Samuel, de Micheaux, Pierre Lafaye, Liquet, Benoit, Roux, Stephane and Buonviso, Nathalie (2008). Odor vapor pressure and quality modulate local field potential oscillatory patterns in the olfactory bulb of the anesthetized rat. European Journal of Neuroscience, 27 (6), 1432-1440. doi: 10.1111/j.1460-9568.2008.06123.x
Liquet, Benoit and Saracco, Jerome (2008). Application of the bootstrap approach to the choice of dimension and the a parameter in the SIRa method.. Communication in Statistics - Simulation and computation, 37 (6), 1198-1218. doi: 10.1080/03610910801889011
Liquet, Benoît and Saracco, Jérôme (2007). Pooled marginal slicing approach via SIR alpha with discrete covariables. Computational Statistics, 22 (4), 599-617. doi: 10.1007/s00180-007-0078-4
Liquet, Benoit, Saracco, Jerome and Commenges, Daniel (2007). Selection between proportional and stratified hazards models based on expected log-likelihood. Computational Statistics, 22 (4), 619-634. doi: 10.1007/s00180-007-0079-3
Commenges, Daniel, Joly, Pierre, Gegout-Petit, Anne and Liquet, Benoit (2007). Choice between semi-parametric estimators of Markov and non-Markov multi-state models from coarsened observations. Scandinavian Journal of Statistics, 34 (1), 33-52. doi: 10.1111/j.1467-9469.2006.00536.x
Liquet, B and Commenges, D (2005). Computation of the p-value of the maximum of score tests in the generalized linear model; application to multiple coding. Statistics and Probability Letters, 71 (1), 33-38. doi: 10.1016/j.spl.2004.10.019
Liquet, Benoit and Commenges, Daniel (2004). Estimating the expectation of the log-likelihood with censored data for estimator selection. Lifetime Data Analysis, 10 (4), 351-367. doi: 10.1007/s10985-004-4772-z
Liquet, B., Sakarovitch, C. and Commenges, D. (2003). Bootstrap choice of estimators in parametric and semiparametric families: an extension of EIC. Biometrics, 59 (1), 172-178. doi: 10.1111/1541-0420.00020
Liquet, B and Commenges, D (2001). Correction of the P-value after multiple coding of an explanatory variable in logistic regression. Statistics in Medicine, 20 (19), 2815-2826. doi: 10.1002/sim.916
Conference Papers
Thiebaut, R., Liquet, B., Hocini, H., Hue, S., Richert, L., Raimbault, M., Le Cao, K. and Levy, Y. (2012). A new method for integrated analysis applied to gene expression and cytokines secretion in response to LIPO-5 vaccine in HIV-negative volunteers. doi: 10.1186/1742-4690-9-S2-P121
Bottolo, Leonardo, Chadeau-Hyam, Marc, Liquet, Benoit and Richardson, Sylvia (2012). GUESS: GPU-based C++ software for Bayesian variable selection regression of multiple responses. Australasian Applied Statistics Conference, Queenstown, New Zealand, 4-7 December 2012.
Liquet, B., Le Cao, K., Hocini, H. and Thiebaut, R. (2012). A novel approach for biomarker selection and the integration of repeated measure experiments from two platforms. NZSA 2012, Dunedin, New Zealand, Dec 2012.
Delorme, P., Lafaye de Micheaux, P., Liquet, B. and Riou, J. (2012). Power and sample size computation for a control of the "r-power". NZSA 2012, Dunedin NZ, December 2012.
Chavent, Marie, Girard, Stéphane, Kuentz, Vanessa, Liquet, Benoît, Nguyen, Thi Mong Ngoc and Saracco, Jérôme (2011). An adaptive SIR method for block-wise evolving data streams. ASMDA 2011: XIVth International Symposium of Applied Stochastic Models and Data Analysis, Rome, Italy, 7-10 June, 2011. Chania, Crete, Greece: ASMDA International Society.